IL_8ZH3_206

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

8ZH3|1|S2|U|1250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_206 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3195

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8ZH3|1|S2|A|1234
8ZH3|1|S2|C|1235
8ZH3|1|S2|A|1236
8ZH3|1|S2|G|1237
*
8ZH3|1|S2|C|1248
8ZH3|1|S2|U|1249
8ZH3|1|S2|U|1250
8ZH3|1|S2|U|1251

Current chains

Chain S2

chain 2 18S rRNA (1771-MER)

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31