IL_8ZH3_233
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZH3_233 not in the Motif Atlas
- Geometric match to IL_8CRE_476
- Geometric discrepancy: 0.1598
- The information below is about IL_8CRE_476
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
8ZH3|1|S2|A|1678
8ZH3|1|S2|G|1679
8ZH3|1|S2|G|1680
8ZH3|1|S2|A|1681
8ZH3|1|S2|U|1682
*
8ZH3|1|S2|A|1719
8ZH3|1|S2|G|1720
8ZH3|1|S2|A|1721
8ZH3|1|S2|A|1722
8ZH3|1|S2|U|1723
Current chains
- Chain S2
- chain 2 18S rRNA (1771-MER)
Nearby chains
- Chain LY
- Large ribosomal subunit protein eL24A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
Coloring options: