IL_8ZH3_237

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZH3_237 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.236

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8ZH3|1|Ta|G|10
8ZH3|1|Ta|A|11
8ZH3|1|Ta|G|12
*
8ZH3|1|Ta|C|24
8ZH3|1|Ta|U|25

Current chains

Chain Ta

tRNA (77-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA