IL_8ZHB_030

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_030 not in the Motif Atlas

Homologous match to IL_8CRE_033

Geometric discrepancy: 0.0678

The information below is about IL_8CRE_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8ZHB|1|LA|U|833
8ZHB|1|LA|G|834
8ZHB|1|LA|A|835
8ZHB|1|LA|A|836
8ZHB|1|LA|G|837
*
8ZHB|1|LA|U|854
8ZHB|1|LA|G|855
8ZHB|1|LA|G|856
8ZHB|1|LA|A|857
8ZHB|1|LA|G|858

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LT

Large ribosomal subunit protein eL19A

Chain Lr

Large ribosomal subunit protein eL43A