IL_8ZHB_086

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

8ZHB|1|LA|C|2230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_086 not in the Motif Atlas

Homologous match to IL_8CRE_093

Geometric discrepancy: 0.569

The information below is about IL_8CRE_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8ZHB|1|LA|U|2210
8ZHB|1|LA|C|2211
8ZHB|1|LA|A|2212
8ZHB|1|LA|A|2213
8ZHB|1|LA|A|2214
8ZHB|1|LA|G|2215
8ZHB|1|LA|U|2216
*
8ZHB|1|LA|A|2227
8ZHB|1|LA|A|2228
8ZHB|1|LA|C|2229
8ZHB|1|LA|C|2230
8ZHB|1|LA|A|2231
8ZHB|1|LA|A|2232
8ZHB|1|LA|G|2233

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lk

Large ribosomal subunit protein eL36A

Chain Lq

Large ribosomal subunit protein eL42A

Chain Tb

Transfer RNA; tRNA