IL_8ZHB_106

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8ZHB|1|LA|G|2944, 8ZHB|1|LA|A|2945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_106 not in the Motif Atlas

Homologous match to IL_8CRE_116

Geometric discrepancy: 0.0523

The information below is about IL_8CRE_116

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8ZHB|1|LA|C|2878
8ZHB|1|LA|U|2879
8ZHB|1|LA|C|2880
*
8ZHB|1|LA|G|2942
8ZHB|1|LA|U|2943
8ZHB|1|LA|G|2944
8ZHB|1|LA|A|2945
8ZHB|1|LA|G|2946

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LX

Large ribosomal subunit protein uL14A