IL_8ZHB_125

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_125 not in the Motif Atlas

Homologous match to IL_8CRE_134

Geometric discrepancy: 0.2965

The information below is about IL_8CRE_134

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8ZHB|1|LA|C|3234
8ZHB|1|LA|U|3235
8ZHB|1|LA|U|3236
8ZHB|1|LA|G|3237
*
8ZHB|1|LA|C|3248
8ZHB|1|LA|U|3249
8ZHB|1|LA|U|3250
8ZHB|1|LA|G|3251

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LQ

Large ribosomal subunit protein uL13A