IL_8ZHB_129

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8ZHB|1|LA|G|3376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_129 not in the Motif Atlas

Homologous match to IL_8P9A_359

Geometric discrepancy: 0.1844

The information below is about IL_8P9A_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8ZHB|1|LA|G|3327
8ZHB|1|LA|U|3328
8ZHB|1|LA|A|3329
*
8ZHB|1|LA|U|3372
8ZHB|1|LA|U|3373
8ZHB|1|LA|A|3374
8ZHB|1|LA|A|3375
8ZHB|1|LA|G|3376
8ZHB|1|LA|C|3377

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LY

Large ribosomal subunit protein eL24A

Chain Lf

Large ribosomal subunit protein eL31A