IL_8ZHB_130

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8ZHB|1|LA|G|3368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_130 not in the Motif Atlas

Homologous match to IL_8CRE_139

Geometric discrepancy: 0.105

The information below is about IL_8CRE_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8ZHB|1|LA|U|3331
8ZHB|1|LA|G|3332
8ZHB|1|LA|U|3333
8ZHB|1|LA|A|3334
8ZHB|1|LA|A|3335
8ZHB|1|LA|G|3336
*
8ZHB|1|LA|C|3366
8ZHB|1|LA|U|3367
8ZHB|1|LA|G|3368
8ZHB|1|LA|A|3369
8ZHB|1|LA|G|3370

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LY

Large ribosomal subunit protein eL24A

Chain Lf

Large ribosomal subunit protein eL31A