IL_8ZHB_165

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

8ZHB|1|S2|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_165 not in the Motif Atlas

Homologous match to IL_9PN5_163

Geometric discrepancy: 0.5823

The information below is about IL_9PN5_163

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8ZHB|1|S2|C|411
8ZHB|1|S2|A|412
8ZHB|1|S2|U|413
*
8ZHB|1|S2|A|420
8ZHB|1|S2|A|421
8ZHB|1|S2|G|422

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LX

Large ribosomal subunit protein uL14A

Chain ST

Small ribosomal subunit protein eS6A