IL_8ZHB_196
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHB_196 not in the Motif Atlas
- Geometric match to IL_8CRE_442
- Geometric discrepancy: 0.0798
- The information below is about IL_8CRE_442
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8ZHB|1|S2|G|1111
8ZHB|1|S2|G|1112
8ZHB|1|S2|A|1113
8ZHB|1|S2|G|1114
8ZHB|1|S2|U|1115
8ZHB|1|S2|A|1116
8ZHB|1|S2|U|1117
8ZHB|1|S2|G|1118
*
8ZHB|1|S2|U|1129
8ZHB|1|S2|G|1130
8ZHB|1|S2|A|1131
8ZHB|1|S2|A|1132
8ZHB|1|S2|A|1133
8ZHB|1|S2|C|1134
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain Sc
- Small ribosomal subunit protein uS12A
Coloring options: