IL_8ZHB_201

3D structure

PDB id

8ZHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHB_201 not in the Motif Atlas

Geometric match to IL_9C75_001

Geometric discrepancy: 0.3994

The information below is about IL_9C75_001

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

8ZHB|1|S2|G|1178
8ZHB|1|S2|G|1179
*
8ZHB|1|S2|C|1459
8ZHB|1|S2|A|1460
8ZHB|1|S2|C|1461

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SH

Small ribosomal subunit protein uS13A

Chain Ta

Transfer RNA; tRNA

Chain Tb

Transfer RNA; tRNA