IL_8ZHC_009

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUUUGG*CUUUGUAAAG

Length

16 nucleotides

Bulged bases

8ZHC|1|LA|G|170, 8ZHC|1|LA|U|248, 8ZHC|1|LA|U|249, 8ZHC|1|LA|U|250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|C|166
8ZHC|1|LA|U|167
8ZHC|1|LA|U|168
8ZHC|1|LA|U|169
8ZHC|1|LA|G|170
8ZHC|1|LA|G|171
*
8ZHC|1|LA|C|247
8ZHC|1|LA|U|248
8ZHC|1|LA|U|249
8ZHC|1|LA|U|250
8ZHC|1|LA|G|251
8ZHC|1|LA|U|252
8ZHC|1|LA|A|253
8ZHC|1|LA|A|254
8ZHC|1|LA|A|255
8ZHC|1|LA|G|256

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LJ

Large ribosomal subunit protein eL8A

Chain LN

Large ribosomal subunit protein eL13A

Chain Lj

Large ribosomal subunit protein uL29A