IL_8ZHC_019

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UG*CAG

Length

5 nucleotides

Bulged bases

8ZHC|1|LA|A|577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_019 not in the Motif Atlas

Homologous match to IL_8CRE_020

Geometric discrepancy: 0.0916

The information below is about IL_8CRE_020

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8ZHC|1|LA|U|511
8ZHC|1|LA|G|512
*
8ZHC|1|LA|C|576
8ZHC|1|LA|A|577
8ZHC|1|LA|G|578

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain LI

Large ribosomal subunit protein uL30A