IL_8ZHC_020

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAUAAAUC*GGAAUAC

Length

16 nucleotides

Bulged bases

8ZHC|1|LA|A|518, 8ZHC|1|LA|U|519, 8ZHC|1|LA|A|521, 8ZHC|1|LA|A|522, 8ZHC|1|LA|G|567, 8ZHC|1|LA|A|568, 8ZHC|1|LA|A|569, 8ZHC|1|LA|A|571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|G|516
8ZHC|1|LA|G|517
8ZHC|1|LA|A|518
8ZHC|1|LA|U|519
8ZHC|1|LA|A|520
8ZHC|1|LA|A|521
8ZHC|1|LA|A|522
8ZHC|1|LA|U|523
8ZHC|1|LA|C|524
*
8ZHC|1|LA|G|566
8ZHC|1|LA|G|567
8ZHC|1|LA|A|568
8ZHC|1|LA|A|569
8ZHC|1|LA|U|570
8ZHC|1|LA|A|571
8ZHC|1|LA|C|572

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain LI

Large ribosomal subunit protein uL30A

Chain LO

Large ribosomal subunit protein eL14A

Chain LU

Large ribosomal subunit protein eL20A