IL_8ZHC_021

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8ZHC|1|LA|U|533, 8ZHC|1|LA|U|557

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|G|530
8ZHC|1|LA|A|531
8ZHC|1|LA|A|532
8ZHC|1|LA|U|533
8ZHC|1|LA|G|534
8ZHC|1|LA|U|535
8ZHC|1|LA|A|536
8ZHC|1|LA|G|537
*
8ZHC|1|LA|U|552
8ZHC|1|LA|A|553
8ZHC|1|LA|U|554
8ZHC|1|LA|U|555
8ZHC|1|LA|A|556
8ZHC|1|LA|U|557
8ZHC|1|LA|A|558
8ZHC|1|LA|G|559
8ZHC|1|LA|C|560

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LO

Large ribosomal subunit protein eL14A

Chain LU

Large ribosomal subunit protein eL20A