IL_8ZHC_048

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_048 not in the Motif Atlas

Homologous match to IL_8CRE_050

Geometric discrepancy: 0.042

The information below is about IL_8CRE_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|U|1122
8ZHC|1|LA|U|1123
8ZHC|1|LA|U|1124
*
8ZHC|1|LA|A|1132
8ZHC|1|LA|G|1133
8ZHC|1|LA|A|1134

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LL

Large ribosomal subunit protein uL16

Chain LV

Large ribosomal subunit protein eL21A

Chain Ld

Large ribosomal subunit protein eL29