IL_8ZHC_055

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_055 not in the Motif Atlas

Geometric match to IL_4KTG_002

Geometric discrepancy: 0.1769

The information below is about IL_4KTG_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8ZHC|1|LA|G|1212
8ZHC|1|LA|U|1213
8ZHC|1|LA|U|1214
*
8ZHC|1|LA|A|1289
8ZHC|1|LA|A|1290
8ZHC|1|LA|C|1291

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain LL

Large ribosomal subunit protein uL16

Chain LU

Large ribosomal subunit protein eL20A

Chain Lo

Large ribosomal subunit protein eL40A