IL_8ZHC_056

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UCAUCUAGACAG*CCGAAUGA

Length

20 nucleotides

Bulged bases

8ZHC|1|LA|C|1218, 8ZHC|1|LA|U|1219, 8ZHC|1|LA|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|U|1214
8ZHC|1|LA|C|1215
8ZHC|1|LA|A|1216
8ZHC|1|LA|U|1217
8ZHC|1|LA|C|1218
8ZHC|1|LA|U|1219
8ZHC|1|LA|A|1220
8ZHC|1|LA|G|1221
8ZHC|1|LA|A|1222
8ZHC|1|LA|C|1223
8ZHC|1|LA|A|1224
8ZHC|1|LA|G|1225
*
8ZHC|1|LA|C|1282
8ZHC|1|LA|C|1283
8ZHC|1|LA|G|1284
8ZHC|1|LA|A|1285
8ZHC|1|LA|A|1286
8ZHC|1|LA|U|1287
8ZHC|1|LA|G|1288
8ZHC|1|LA|A|1289

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LK

Large ribosomal subunit protein uL6A

Chain LL

Large ribosomal subunit protein uL16

Chain LU

Large ribosomal subunit protein eL20A

Chain Lo

Large ribosomal subunit protein eL40A