IL_8ZHC_067

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8ZHC|1|LA|U|1819, 8ZHC|1|LA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_067 not in the Motif Atlas

Homologous match to IL_8CRE_070

Geometric discrepancy: 0.3928

The information below is about IL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8ZHC|1|LA|G|1622
8ZHC|1|LA|G|1623
*
8ZHC|1|LA|U|1818
8ZHC|1|LA|U|1819
8ZHC|1|LA|U|1820
8ZHC|1|LA|C|1821

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Li

Large ribosomal subunit protein eL34A

Chain Lm

Large ribosomal subunit protein eL38