IL_8ZHC_081

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8ZHC|1|LA|U|1930

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_081 not in the Motif Atlas

Homologous match to IL_8CRE_084

Geometric discrepancy: 0.072

The information below is about IL_8CRE_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8ZHC|1|LA|C|1917
8ZHC|1|LA|G|1918
8ZHC|1|LA|U|1919
8ZHC|1|LA|A|1920
8ZHC|1|LA|A|1921
8ZHC|1|LA|C|1922
*
8ZHC|1|LA|G|1927
8ZHC|1|LA|G|1928
8ZHC|1|LA|A|1929
8ZHC|1|LA|U|1930
8ZHC|1|LA|A|1931
8ZHC|1|LA|A|1932
8ZHC|1|LA|G|1933

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lp

Large ribosomal subunit protein eL41A

Chain Lr

Large ribosomal subunit protein eL43A

Chain S2

Small subunit ribosomal RNA; SSU rRNA