IL_8ZHC_097

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8ZHC|1|LA|A|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_097 not in the Motif Atlas

Homologous match to IL_8CRE_099

Geometric discrepancy: 0.0838

The information below is about IL_8CRE_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8ZHC|1|LA|G|2411
8ZHC|1|LA|A|2412
*
8ZHC|1|LA|U|2806
8ZHC|1|LA|A|2807
8ZHC|1|LA|C|2808
8ZHC|1|LA|C|2809

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Ta

Transfer RNA; tRNA

Chain eR

Eukaryotic peptide chain release factor subunit 1

Chain pp

Peptide 2k