IL_8ZHC_098

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8ZHC|1|LA|G|2605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_098 not in the Motif Atlas

Homologous match to IL_8CRE_100

Geometric discrepancy: 0.0657

The information below is about IL_8CRE_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8ZHC|1|LA|U|2422
8ZHC|1|LA|A|2423
8ZHC|1|LA|G|2424
*
8ZHC|1|LA|U|2603
8ZHC|1|LA|G|2604
8ZHC|1|LA|G|2605
8ZHC|1|LA|G|2606

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain LP

Large ribosomal subunit protein eL15A

Chain Lq

Large ribosomal subunit protein eL42A