IL_8ZHC_105
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GGCU*GAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_105 not in the Motif Atlas
- Homologous match to IL_8CRE_111
- Geometric discrepancy: 0.0794
- The information below is about IL_8CRE_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68909.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZHC|1|LA|G|2822
8ZHC|1|LA|G|2823
8ZHC|1|LA|C|2824
8ZHC|1|LA|U|2825
*
8ZHC|1|LA|G|2862
8ZHC|1|LA|A|2863
8ZHC|1|LA|U|2864
8ZHC|1|LA|U|2865
8ZHC|1|LA|C|2866
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LL
- Large ribosomal subunit protein uL16
- Chain Ld
- Large ribosomal subunit protein eL29
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
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