IL_8ZHC_113
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_113 not in the Motif Atlas
- Geometric match to IL_8P9A_338
- Geometric discrepancy: 0.083
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZHC|1|LA|C|2888
8ZHC|1|LA|A|2889
8ZHC|1|LA|U|2890
8ZHC|1|LA|A|2891
*
8ZHC|1|LA|U|2908
8ZHC|1|LA|A|2909
8ZHC|1|LA|A|2910
8ZHC|1|LA|G|2911
8ZHC|1|LA|C|2912
8ZHC|1|LA|G|2913
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LK
- Large ribosomal subunit protein uL6A
- Chain LQ
- Large ribosomal subunit protein uL13A
- Chain LX
- Large ribosomal subunit protein uL14A
- Chain Lo
- Large ribosomal subunit protein eL40A
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