IL_8ZHC_125
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|3177
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_125 not in the Motif Atlas
- Homologous match to IL_8P9A_351
- Geometric discrepancy: 0.0822
- The information below is about IL_8P9A_351
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 160
Unit IDs
8ZHC|1|LA|G|3176
8ZHC|1|LA|A|3177
8ZHC|1|LA|U|3178
*
8ZHC|1|LA|A|3209
8ZHC|1|LA|C|3210
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LO
- Large ribosomal subunit protein eL14A
- Chain LQ
- Large ribosomal subunit protein uL13A
- Chain LU
- Large ribosomal subunit protein eL20A
- Chain Lh
- Large ribosomal subunit protein eL33A
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