IL_8ZHC_127

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

8ZHC|1|LA|A|3225, 8ZHC|1|LA|A|3226, 8ZHC|1|LA|C|3227, 8ZHC|1|LA|U|3258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|C|3224
8ZHC|1|LA|A|3225
8ZHC|1|LA|A|3226
8ZHC|1|LA|C|3227
8ZHC|1|LA|G|3228
*
8ZHC|1|LA|U|3257
8ZHC|1|LA|U|3258
8ZHC|1|LA|G|3259

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LH

Large ribosomal subunit protein eL6B

Chain LO

Large ribosomal subunit protein eL14A

Chain LQ

Large ribosomal subunit protein uL13A

Chain Lh

Large ribosomal subunit protein eL33A