IL_8ZHC_133
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUA*UUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 8ZHC|1|LA|G|3376
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_133 not in the Motif Atlas
- Homologous match to IL_8CRE_138
- Geometric discrepancy: 0.0573
- The information below is about IL_8CRE_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43622.1
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8ZHC|1|LA|G|3327
8ZHC|1|LA|U|3328
8ZHC|1|LA|A|3329
*
8ZHC|1|LA|U|3372
8ZHC|1|LA|U|3373
8ZHC|1|LA|A|3374
8ZHC|1|LA|A|3375
8ZHC|1|LA|G|3376
8ZHC|1|LA|C|3377
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LY
- Large ribosomal subunit protein eL24A
- Chain Lf
- Large ribosomal subunit protein eL31A
Coloring options: