IL_8ZHC_134

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

8ZHC|1|LA|G|3368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_134 not in the Motif Atlas

Homologous match to IL_8P9A_360

Geometric discrepancy: 0.0576

The information below is about IL_8P9A_360

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8ZHC|1|LA|U|3331
8ZHC|1|LA|G|3332
8ZHC|1|LA|U|3333
8ZHC|1|LA|A|3334
8ZHC|1|LA|A|3335
8ZHC|1|LA|G|3336
*
8ZHC|1|LA|C|3366
8ZHC|1|LA|U|3367
8ZHC|1|LA|G|3368
8ZHC|1|LA|A|3369
8ZHC|1|LA|G|3370

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LY

Large ribosomal subunit protein eL24A

Chain Lf

Large ribosomal subunit protein eL31A