IL_8ZHC_137

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8ZHC|1|LA|U|3353, 8ZHC|1|LA|U|3354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_137 not in the Motif Atlas

Homologous match to IL_8P9A_363

Geometric discrepancy: 0.4693

The information below is about IL_8P9A_363

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8ZHC|1|LA|C|3348
8ZHC|1|LA|C|3349
*
8ZHC|1|LA|G|3352
8ZHC|1|LA|U|3353
8ZHC|1|LA|U|3354
8ZHC|1|LA|G|3355

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A