IL_8ZHC_140

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_140 not in the Motif Atlas

Homologous match to IL_8P9A_367

Geometric discrepancy: 0.2469

The information below is about IL_8P9A_367

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

8ZHC|1|LB|C|29
8ZHC|1|LB|G|30
*
8ZHC|1|LB|C|47
8ZHC|1|LB|U|48
8ZHC|1|LB|G|49

Current chains

Chain LB

5S rRNA (121-MER)

Nearby chains

Chain LG

Large ribosomal subunit protein uL18

Chain LM

Large ribosomal subunit protein uL5B