IL_8ZHC_142
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 8ZHC|1|LB|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_142 not in the Motif Atlas
- Homologous match to IL_8P9A_369
- Geometric discrepancy: 0.0896
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
8ZHC|1|LB|A|72
8ZHC|1|LB|C|73
8ZHC|1|LB|C|74
8ZHC|1|LB|G|75
8ZHC|1|LB|A|76
8ZHC|1|LB|G|77
8ZHC|1|LB|U|78
8ZHC|1|LB|A|79
8ZHC|1|LB|G|80
*
8ZHC|1|LB|C|100
8ZHC|1|LB|G|101
8ZHC|1|LB|A|102
8ZHC|1|LB|A|103
8ZHC|1|LB|A|104
8ZHC|1|LB|C|105
8ZHC|1|LB|U|106
Current chains
- Chain LB
- 5S rRNA (121-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large ribosomal subunit protein uL30A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LU
- Large ribosomal subunit protein eL20A
- Chain LV
- Large ribosomal subunit protein eL21A
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