IL_8ZHC_189

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8ZHC|1|S2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_189 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2306

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8ZHC|1|S2|G|868
8ZHC|1|S2|A|869
*
8ZHC|1|S2|U|958
8ZHC|1|S2|U|959
8ZHC|1|S2|U|960

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain SY

Small ribosomal subunit protein uS15

Chain Sf

Small ribosomal subunit protein eS27A