IL_8ZHC_192
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUAUUCAAUUGUCAG*CUUGGAUUUAUUGAAGAC
- Length
- 33 nucleotides
- Bulged bases
- 8ZHC|1|S2|C|897, 8ZHC|1|S2|U|912, 8ZHC|1|S2|G|913, 8ZHC|1|S2|U|920, 8ZHC|1|S2|U|921, 8ZHC|1|S2|A|923, 8ZHC|1|S2|A|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|S2|G|885
8ZHC|1|S2|U|886
8ZHC|1|S2|A|887
8ZHC|1|S2|U|888
8ZHC|1|S2|U|889
8ZHC|1|S2|C|890
8ZHC|1|S2|A|891
8ZHC|1|S2|A|892
8ZHC|1|S2|U|893
8ZHC|1|S2|U|894
8ZHC|1|S2|G|895
8ZHC|1|S2|U|896
8ZHC|1|S2|C|897
8ZHC|1|S2|A|898
8ZHC|1|S2|G|899
*
8ZHC|1|S2|C|910
8ZHC|1|S2|U|911
8ZHC|1|S2|U|912
8ZHC|1|S2|G|913
8ZHC|1|S2|G|914
8ZHC|1|S2|A|915
8ZHC|1|S2|U|916
8ZHC|1|S2|U|917
8ZHC|1|S2|U|918
8ZHC|1|S2|A|919
8ZHC|1|S2|U|920
8ZHC|1|S2|U|921
8ZHC|1|S2|G|922
8ZHC|1|S2|A|923
8ZHC|1|S2|A|924
8ZHC|1|S2|G|925
8ZHC|1|S2|A|926
8ZHC|1|S2|C|927
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Se
- Small ribosomal subunit protein eS26B
Coloring options: