IL_8ZHC_208
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8ZHC|1|S2|U|1432, 8ZHC|1|S2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_208 not in the Motif Atlas
- Geometric match to IL_8P9A_440
- Geometric discrepancy: 0.1327
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
8ZHC|1|S2|U|1276
8ZHC|1|S2|G|1277
8ZHC|1|S2|G|1278
*
8ZHC|1|S2|U|1430
8ZHC|1|S2|C|1431
8ZHC|1|S2|U|1432
8ZHC|1|S2|G|1433
8ZHC|1|S2|U|1434
8ZHC|1|S2|G|1435
8ZHC|1|S2|A|1436
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SC
- Small ribosomal subunit protein eS10A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
Coloring options: