IL_8ZHC_209
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 8ZHC|1|S2|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_209 not in the Motif Atlas
- Geometric match to IL_8CRE_455
- Geometric discrepancy: 0.126
- The information below is about IL_8CRE_455
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 160
Unit IDs
8ZHC|1|S2|C|1280
8ZHC|1|S2|G|1281
*
8ZHC|1|S2|C|1426
8ZHC|1|S2|A|1427
8ZHC|1|S2|G|1428
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SR
- Small ribosomal subunit protein uS5
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
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