IL_8ZHC_215
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUCUAACCUUG*CUUGGUAAUC
- Length
- 21 nucleotides
- Bulged bases
- 8ZHC|1|S2|C|1490, 8ZHC|1|S2|U|1491, 8ZHC|1|S2|A|1492, 8ZHC|1|S2|A|1493, 8ZHC|1|S2|U|1496, 8ZHC|1|S2|U|1497, 8ZHC|1|S2|U|1511, 8ZHC|1|S2|U|1514, 8ZHC|1|S2|A|1516, 8ZHC|1|S2|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|S2|G|1488
8ZHC|1|S2|U|1489
8ZHC|1|S2|C|1490
8ZHC|1|S2|U|1491
8ZHC|1|S2|A|1492
8ZHC|1|S2|A|1493
8ZHC|1|S2|C|1494
8ZHC|1|S2|C|1495
8ZHC|1|S2|U|1496
8ZHC|1|S2|U|1497
8ZHC|1|S2|G|1498
*
8ZHC|1|S2|C|1509
8ZHC|1|S2|U|1510
8ZHC|1|S2|U|1511
8ZHC|1|S2|G|1512
8ZHC|1|S2|G|1513
8ZHC|1|S2|U|1514
8ZHC|1|S2|A|1515
8ZHC|1|S2|A|1516
8ZHC|1|S2|U|1517
8ZHC|1|S2|C|1518
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SC
- Small ribosomal subunit protein eS10A
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
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