IL_8ZHC_221
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8ZHC|1|S2|A|1756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZHC_221 not in the Motif Atlas
- Geometric match to IL_8CRE_401
- Geometric discrepancy: 0.2499
- The information below is about IL_8CRE_401
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZHC|1|S2|C|1644
8ZHC|1|S2|G|1645
8ZHC|1|S2|C|1646
8ZHC|1|S2|U|1647
*
8ZHC|1|S2|A|1753
8ZHC|1|S2|A|1754
8ZHC|1|S2|A|1755
8ZHC|1|S2|A|1756
8ZHC|1|S2|G|1757
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
- Chain mR
- RNA (5'-R(P*GP*AP*CP*CP*CP*UP*UP*AP*AP*C)-3')
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