IL_8ZHC_224
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUGAAUGGCUUAGUGAG*CAAACUUGGUCAUUUA
- Length
- 33 nucleotides
- Bulged bases
- 8ZHC|1|S2|U|1657, 8ZHC|1|S2|G|1658, 8ZHC|1|S2|A|1659, 8ZHC|1|S2|A|1660, 8ZHC|1|S2|C|1664, 8ZHC|1|S2|U|1666, 8ZHC|1|S2|G|1670, 8ZHC|1|S2|U|1734, 8ZHC|1|S2|U|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|S2|U|1656
8ZHC|1|S2|U|1657
8ZHC|1|S2|G|1658
8ZHC|1|S2|A|1659
8ZHC|1|S2|A|1660
8ZHC|1|S2|U|1661
8ZHC|1|S2|G|1662
8ZHC|1|S2|G|1663
8ZHC|1|S2|C|1664
8ZHC|1|S2|U|1665
8ZHC|1|S2|U|1666
8ZHC|1|S2|A|1667
8ZHC|1|S2|G|1668
8ZHC|1|S2|U|1669
8ZHC|1|S2|G|1670
8ZHC|1|S2|A|1671
8ZHC|1|S2|G|1672
*
8ZHC|1|S2|C|1729
8ZHC|1|S2|A|1730
8ZHC|1|S2|A|1731
8ZHC|1|S2|A|1732
8ZHC|1|S2|C|1733
8ZHC|1|S2|U|1734
8ZHC|1|S2|U|1735
8ZHC|1|S2|G|1736
8ZHC|1|S2|G|1737
8ZHC|1|S2|U|1738
8ZHC|1|S2|C|1739
8ZHC|1|S2|A|1740
8ZHC|1|S2|U|1741
8ZHC|1|S2|U|1742
8ZHC|1|S2|U|1743
8ZHC|1|S2|A|1744
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Large ribosomal subunit protein uL14A
- Chain LY
- Large ribosomal subunit protein eL24A
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain Sc
- Small ribosomal subunit protein uS12A
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