IL_8ZHC_227

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZHC_227 not in the Motif Atlas

Geometric match to IL_8CRE_476

Geometric discrepancy: 0.1332

The information below is about IL_8CRE_476

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8ZHC|1|S2|A|1678
8ZHC|1|S2|G|1679
8ZHC|1|S2|G|1680
8ZHC|1|S2|A|1681
8ZHC|1|S2|U|1682
*
8ZHC|1|S2|A|1719
8ZHC|1|S2|G|1720
8ZHC|1|S2|A|1721
8ZHC|1|S2|A|1722
8ZHC|1|S2|U|1723

Current chains

Chain S2

chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LY

Large ribosomal subunit protein eL24A

Chain ST

Small ribosomal subunit protein eS6A

Chain SV

Small ribosomal subunit protein eS8A