IL_8ZTU_138

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZTU_138 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1041

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8ZTU|1|a|U|1851
8ZTU|1|a|U|1852
8ZTU|1|a|A|1853
8ZTU|1|a|A|1854
8ZTU|1|a|U|1855
8ZTU|1|a|U|1856
8ZTU|1|a|G|1857
8ZTU|1|a|A|1858
8ZTU|1|a|U|1859
8ZTU|1|a|G|1860
*
8ZTU|1|a|U|1882
8ZTU|1|a|U|1883
8ZTU|1|a|G|1884
8ZTU|1|a|A|1885
8ZTU|1|a|U|1886
8ZTU|1|a|C|1887
8ZTU|1|a|G|1888
8ZTU|1|a|A|1889
8ZTU|1|a|A|1890
8ZTU|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains