IL_8ZTV_138

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZTV_138 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0864

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8ZTV|1|a|U|1851
8ZTV|1|a|U|1852
8ZTV|1|a|A|1853
8ZTV|1|a|A|1854
8ZTV|1|a|U|1855
8ZTV|1|a|U|1856
8ZTV|1|a|G|1857
8ZTV|1|a|A|1858
8ZTV|1|a|U|1859
8ZTV|1|a|G|1860
*
8ZTV|1|a|U|1882
8ZTV|1|a|U|1883
8ZTV|1|a|G|1884
8ZTV|1|a|A|1885
8ZTV|1|a|U|1886
8ZTV|1|a|C|1887
8ZTV|1|a|G|1888
8ZTV|1|a|A|1889
8ZTV|1|a|A|1890
8ZTV|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains