IL_8ZTV_155

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

8ZTV|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZTV_155 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1965

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8ZTV|1|a|A|2459
8ZTV|1|a|U|2460
8ZTV|1|a|A|2461
*
8ZTV|1|a|U|2489
8ZTV|1|a|G|2490
8ZTV|1|a|U|2491
8ZTV|1|a|U|2492
8ZTV|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

Peptide chain release factor 2

Chain l

50S ribosomal protein L16