IL_9A9V_005

3D structure

PDB id

9A9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

All-atom model of the Rev Response RNA Element of HIV-1 generated by mutagenesis- and FRET-guided FARFAR2 model selection.

Experimental method

HYBRID

Resolution

Loop

Sequence

UGGGAG*UGGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9A9V|1|A|U|24
9A9V|1|A|G|25
9A9V|1|A|G|26
9A9V|1|A|G|27
9A9V|1|A|A|28
9A9V|1|A|G|29
*
9A9V|1|A|U|204
9A9V|1|A|G|205
9A9V|1|A|G|206
9A9V|1|A|A|207
9A9V|1|A|A|208

Current chains

Chain A

RNA (234-MER)

Nearby chains