IL_9AR5_001

3D structure

PDB id

9AR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Acidothermus cellulolyticus Cas9 bound with methylated DNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AR5_001 not in the Motif Atlas

Geometric match to IL_8C3A_510

Geometric discrepancy: 0.3024

The information below is about IL_8C3A_510

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

9AR5|1|B|G|30
9AR5|1|B|G|31
9AR5|1|B|A|32
*
9AR5|1|B|U|45
9AR5|1|B|A|46
9AR5|1|B|C|47

Current chains

Chain B

RNA (92-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease, Csn1 family