3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
ACAAU*AU
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AX7_017 not in the Motif Atlas
Homologous match to IL_5J7L_018
Geometric discrepancy: 0.091
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

9AX7|1|A|A|371
9AX7|1|A|C|372
9AX7|1|A|A|373
9AX7|1|A|A|374
9AX7|1|A|U|375
*
9AX7|1|A|A|389
9AX7|1|A|U|390

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain P
30S ribosomal protein S16

Coloring options:


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