3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
9AX7|1|a|C|1045, 9AX7|1|a|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AX7_104 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.1804
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

9AX7|1|a|C|1043
9AX7|1|a|C|1044
9AX7|1|a|C|1045
9AX7|1|a|A|1046
9AX7|1|a|G|1047
9AX7|1|a|A|1048
9AX7|1|a|C|1049
9AX7|1|a|A|1050
9AX7|1|a|G|1051
*
9AX7|1|a|U|1108
9AX7|1|a|C|1109
9AX7|1|a|G|1110
9AX7|1|a|A|1111
9AX7|1|a|G|1112

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain g
50S ribosomal protein L6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0758 s