IL_9AX7_137

3D structure

PDB id

9AX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX7_137 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0803

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9AX7|1|a|U|1851
9AX7|1|a|U|1852
9AX7|1|a|A|1853
9AX7|1|a|A|1854
9AX7|1|a|U|1855
9AX7|1|a|U|1856
9AX7|1|a|G|1857
9AX7|1|a|A|1858
9AX7|1|a|U|1859
9AX7|1|a|G|1860
*
9AX7|1|a|U|1882
9AX7|1|a|U|1883
9AX7|1|a|G|1884
9AX7|1|a|A|1885
9AX7|1|a|U|1886
9AX7|1|a|C|1887
9AX7|1|a|G|1888
9AX7|1|a|A|1889
9AX7|1|a|A|1890
9AX7|1|a|G|1891

Current chains

Chain a

23S ribosomal RNA

Nearby chains