3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AX7_137 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.0803
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

9AX7|1|a|U|1851
9AX7|1|a|U|1852
9AX7|1|a|A|1853
9AX7|1|a|A|1854
9AX7|1|a|U|1855
9AX7|1|a|U|1856
9AX7|1|a|G|1857
9AX7|1|a|A|1858
9AX7|1|a|U|1859
9AX7|1|a|G|1860
*
9AX7|1|a|U|1882
9AX7|1|a|U|1883
9AX7|1|a|G|1884
9AX7|1|a|A|1885
9AX7|1|a|U|1886
9AX7|1|a|C|1887
9AX7|1|a|G|1888
9AX7|1|a|A|1889
9AX7|1|a|A|1890
9AX7|1|a|G|1891

Current chains

Chain a
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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