3D structure

PDB id
9AX7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
9AX7|1|a|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9AX7_166 not in the Motif Atlas
Homologous match to IL_5J7L_350
Geometric discrepancy: 0.0729
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9AX7|1|a|G|2737
9AX7|1|a|A|2738
9AX7|1|a|U|2739
9AX7|1|a|A|2740
9AX7|1|a|A|2741
9AX7|1|a|G|2742
*
9AX7|1|a|C|2762
9AX7|1|a|G|2763
9AX7|1|a|A|2764
9AX7|1|a|A|2765
9AX7|1|a|A|2766
9AX7|1|a|C|2767

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain g
50S ribosomal protein L6
Chain i
50S ribosomal protein L13

Coloring options:


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