IL_9AX8_016

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9AX8|1|A|G|801, 9AX8|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX8_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0803

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9AX8|1|A|G|674
9AX8|1|A|A|675
9AX8|1|A|A|676
9AX8|1|A|A|677
9AX8|1|A|C|678
*
9AX8|1|A|G|799
9AX8|1|A|A|800
9AX8|1|A|G|801
9AX8|1|A|A|802
9AX8|1|A|U|803
9AX8|1|A|A|804
9AX8|1|A|G|805
9AX8|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15